top of page
Image by Alfons Morales

DATA RESOURCES

No.
Source
Tissue_Type
Data_Type
Reference
1
GTEx
53 Tissues / Eye
Bulk RNASEQ / scRNASEQ / WGS
https://gtexportal.org/
2
Mendeley_Data
PBMC
CyTOF
https://data.mendeley.com/datasets/nkcb8nc7w8/1
3
SDY1658
PBMC
CyTOF
https://browser.immport.org/browser?path=SDY1658%2FResultFiles%2FCyTOF_result
4
Mendeley_Data
Whole Blood
CyTOF
https://zenodo.org/record/3951613#.YIxPmqkzZ_Q
5
Mendeley_Data
Lymph Nodes
CyTOF
https://zenodo.org/record/3951613#.YIxPmqkzZ_Q
6
Mendeley_Data
Colon
CyTOF
https://zenodo.org/record/3951613#.YIxPmqkzZ_Q
7
Mendeley_Data
PBMC
CyTOF
https://zenodo.org/record/3951613#.YIxPmqkzZ_Q
8
SDY1389
Spleen
CyTOF
https://www.immport.org/shared/study/SDY1389
9
SDY1389
Bone Marrow
CyTOF
https://www.immport.org/shared/study/SDY1389
10
SDY1389
Lung
CyTOF
https://www.immport.org/shared/study/SDY1389
11
SDY1389
Lymph Nodes (Lung)
CyTOF
https://www.immport.org/shared/study/SDY1389
12
SDY1389
PBMC
CyTOF
https://www.immport.org/shared/study/SDY1389
13
SDY1389
Whole Blood
CyTOF
https://www.immport.org/shared/study/SDY1389
14
Mendeley_Data
PBMC
CyTOF
https://zenodo.org/record/4646713#.YIxkDakzZ_Q
15
SDY475
Whole Blood
CyTOF
https://www.immport.org/shared/study/SDY475
16
FR-FCM-Z2MA/FR-FCM-Z2MC
Bone Marrow (B Cell Panel)
CyTOF
http://flowrepository.org/public_experiment_representations/2762, http://flowrepository.org/id/FR-FCM-Z2MC
17
FR-FCM-Z2MA/FR-FCM-Z2MC
PBMC (B Cell Panel)
CyTOF
http://flowrepository.org/public_experiment_representations/2762, http://flowrepository.org/id/FR-FCM-Z2MC
18
FR-FCM-Z2MA/FR-FCM-Z2MC
Tonsil (B Cell Panel)
CyTOF
http://flowrepository.org/public_experiment_representations/2762, http://flowrepository.org/id/FR-FCM-Z2MC
19
Mendeley_Data
Brain (Synaptosomes)
CyTOF
https://zenodo.org/record/4624283#.YIx5aKkzZ_Q
20
Mendeley_Data
RBCs
CyTOF
https://zenodo.org/record/4624283#.YIx5aKkzZ_Q
21
Mendeley_Data
Platelets
CyTOF
https://zenodo.org/record/4624283#.YIx5aKkzZ_Q
22
Mendeley_Data
Liver
CyTOF
https://data.mendeley.com/datasets/ttccnvj8sj/5
23
Mendeley_Data
PBMC
CyTOF
https://data.mendeley.com/datasets/ttccnvj8sj/5
24
Mendeley_Data
Breast
CyTOF
https://data.mendeley.com/datasets/gb83sywsjc/1
25
FR-FCM-Z24H
Colon (mucosa)
CyTOF
https://flowrepository.org/experiments/2193
26
SDY461
Blood (WBC)
CyTOF
https://www.immport.org/shared/study/SDY461
27
SDY420
PBMC
CyTOF+Flow
https://browser.immport.org/browser?path=SDY420
28
Mendeley_Data
Thymus
Flow Cytometry
https://data.mendeley.com/datasets/nkcb8nc7w8/1
29
SDY1389
Bone Marrow
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
30
SDY1389
Spleen
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
31
SDY1389
Thymus
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
32
SDY1389
Lung
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
33
SDY1389
Lung Lymph node, Lung/Mesenteric/Inguinal lymph nodes
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
34
SDY1389
PBMC
Flow Cytometry
https://www.immport.org/shared/study/SDY1389
35
SDY997
Kidney
Flow Cytometry
https://www.immport.org/shared/study/SDY997
36
SDY1302
Cord Blood
Flow Cytometry
https://www.immport.org/shared/study/SDY1302
37
SDY1302
PBMC
Flow Cytometry
https://www.immport.org/shared/study/SDY1302
38
SDY702
Ileum (Small_Intestine)
Flow Cytometry
https://www.immport.org/shared/study/SDY702
39
SDY702
Spleen
Flow Cytometry
https://www.immport.org/shared/study/SDY702
40
SDY702
Colon
Flow Cytometry
https://www.immport.org/shared/study/SDY702
41
SDY702
Lymph Nodes (ILN,LLN,MLN)
Flow Cytometry
https://www.immport.org/shared/study/SDY702
42
SDY702
Jejunum (Small_Intestine)
Flow Cytometry
https://www.immport.org/shared/study/SDY702
43
SDY702
Lung
Flow Cytometry
https://www.immport.org/shared/study/SDY702
44
SDY702
Thymus
Flow Cytometry
https://www.immport.org/shared/study/SDY702
45
SDY702
Whole Blood
Flow Cytometry
https://www.immport.org/shared/study/SDY702
46
SDY4
Skin
Flow Cytometry
https://browser.immport.org/browser?path=SDY4
47
FR-FCM-Z26T
Fetal 7 intestines, 3 livers, 3 spleens
Flow Cytometry
https://flowrepository.org/id/FR-FCM-Z26T
48
FR-FCM-Z3YD
Fetal and Adult Skin
Flow Cytometry
https://flowrepository.org/id/FR-FCM-Z3YD
49
GSE165659
4 adipose omentum,1 adrenal gland,4 aorta,2 tibial artery,2 sigmoid colon,5 transverse colon,2 esophagus gastroesophageal junction,3 esophagus mucosa,4 esophagus muscularis,2 heart right atrial appendage,2 heart left ventricle,1 liver,4 lung,2 breast mammary tissue,5 gastrocnemius muscle,3 tibial nerve,1 ovary,4 pancreas,2 skin non sun exposed,4 skin sun exposed,3 small intestine terminal ileum,4 stomach,3 thyroid,2 uterus,1 vagina
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165659
50
10X
10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.2)
scATAC
https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_pbmc_10k_nextgem
51
10X
10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor (Next GEM v1.1)
scATAC
https://support.10xgenomics.com/single-cell-atac/datasets/1.1.0/atac_pbmc_10k_nextgem
52
10X
10k Peripheral blood mononuclear cells (PBMCs) from a healthy donor
scATAC
https://support.10xgenomics.com/single-cell-atac/datasets/1.2.0/atac_v1_pbmc_10k
53
GSE155683
Eyes (Cornea/Conjunctiva)
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155683
54
GSE165860
Tonsil
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165860
55
GSE161381
Lung (Superseries: GSE161383)
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161383
56
GSE149683
Fetal multi-tissues (4 adrenal, 7 brain, 3 eye, 5 heart, 3 intestine, 8 kidney, 7 liver, 8 lung, 2 muscle, 1 pancreas, 5 placenta, 1 spleen, 2 stomach, 4 thymus)
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149683
57
GSE147672
Brain (39 individuals, 7 sub-bran regions)
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE147672
58
GSE107816
PBMC (Superseries: GSE107817)
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107816
59
GSE129785
PBMC
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129785
60
GSE129785
Bone Marrow
scATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129785
61
E-MTAB-9068/E-MTAB-9067
Fetal bones marrow
scATAC
https://reader.elsevier.com/reader/sd/pii/S1934590920305531?token=4B88AAB6EC9B05DCBDE1BCDB00B9F20B4A082084ADBFFA3D2936F17C3ECB88EF7DEA9656DCF76FC289915E1C56C62933&originRegion=eu-west-1&originCreation=20210516203409
62
E-MTAB-9068/E-MTAB-9067
Fetal liver
scATAC
https://reader.elsevier.com/reader/sd/pii/S1934590920305531?token=4B88AAB6EC9B05DCBDE1BCDB00B9F20B4A082084ADBFFA3D2936F17C3ECB88EF7DEA9656DCF76FC289915E1C56C62933&originRegion=eu-west-1&originCreation=20210516203409
63
10X
Human B cells from a healthy donor pre-flu vaccination (v2)
scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/5.0.0/sc5p_v2_hs_B_prevax_10k_5gex_B
64
10X
Human PBMC from a Healthy Donor, 10k cells - multi (v2)
scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/5.0.0/sc5p_v2_hs_PBMC_10k_multi_5gex_5fb_b_t
65
10X
PBMCs from a Healthy Donor: Whole Transcriptome Analysis
scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/4.0.0/Parent_SC5_PBMC
66
10X
PBMCs of a Healthy Donor (v1)
scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/3.1.0/vdj_v1_hs_pbmc3
67
GSE127774
Brain (BA24, Caudate, Cerebellar Grey Matter)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE127774
68
GSE164101
Brain (hypothalamus)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164101
69
GSE148371
Eyes
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148371
70
GSE135618
Brain Frontal Lobe
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135618
71
GSE129363
SVF of Subcutaneous and visceral adipose tissue
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129363
72
GSE136229
Adipose visceral
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE136229
73
10X
Frozen BMMCs (Healthy Control 1)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_bmmc_healthy_donor1
74
10X
Frozen BMMCs (Healthy Control 2)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_bmmc_healthy_donor2
75
10X
Frozen PBMCs (Donor A)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_a
76
10X
Frozen PBMCs (Donor B)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_b
77
10X
Frozen PBMCs (Donor C)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/frozen_pbmc_donor_c
78
10X
Fresh 68k PBMCs (Donor A)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/fresh_68k_pbmc_donor_a
79
10X
3k PBMCs from a Healthy Donor
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.0.0/pbmc3k
80
10X
33k PBMCs from a Healthy Donor
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc33k
81
10X
8k PBMCs from a Healthy Donor
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.2.0/pbmc8k
82
10X
4k Pan T Cells from a Healthy Donor
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.2.0/t_4k
83
10X
10k PBMCs from a Healthy Donor - Gene Expression and Cell Surface Protein
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_protein_v3
84
10X
5k Peripheral blood mononuclear cells (PBMCs) from a healthy donor with cell surface proteins (Next GEM)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.1.0/5k_pbmc_protein_v3_nextgem
85
10X
Peripheral blood mononuclear cells (PBMCs) from a healthy donor - Chromium Connect (channel 1)
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.1.0/connect_5k_pbmc_NGSC3_ch1
86
10X
PBMCs from a Healthy Donor: Targeted, Immunology Panel
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/4.0.0/Targeted_NGSC3_DI_PBMC_Immunology
87
10X
PBMCs from a Healthy Donor: Whole Transcriptome Analysis
scRNASEQ
https://support.10xgenomics.com/single-cell-gene-expression/datasets/4.0.0/Parent_NGSC3_DI_PBMC
88
GSE134355
Construction of A Human Cell Landscape by Single-cell mRNA-seq
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134355
89
GSE120046
Embryonic Brain Cells
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120046
90
GSE164898
Single cell atlas of the healthy breast
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164898
91
GSE102596
Kidney Cortex
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102596
92
Kidney Atlas
Kidney
scRNASEQ
https://www.kidneycellatlas.org/
93
GSE137864
HSPC Bone Marrow Cells
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE137864
94
GSE94820
PBMCs
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94820
95
GSE99095
Bone Marrow Cells
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99095
96
GSE118127
Ovary
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118127
97
E-MTAB-8381
Ovary
scRNASEQ
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8381/samples/
98
GSE114530
Fetal Kidney
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114530
99
E-MTAB-6701
Maternal PBMCs, decidua, placenta (10X)
scRNASEQ
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6701/
100
E-MTAB-6678
Maternal PBMCs, decidua (SMARTSEQ2)
scRNASEQ
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6678/
101
GSE75478
Bone Marrow Cells
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE75478
102
GSE109488
Fetal Kidney
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109488
103
GSE84133
Pancreas
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84133
104
GSE109822
Skin (2 scRNASEQ, 1 bulk spatial)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109822
105
GSE81547
Pancreas
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81547
106
GSE85241
Pancreas
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85241
107
GSE97942
Brain (Sub-series: GSE97930, GSE97887)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97942
108
GSE67835
Brain (cortical)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE67835
109
GSE120508
Testis (Sub-series: GSE112013, GSE120506, GSE120507)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120508
110
Science
Kidney
scRNASEQ
https://science.sciencemag.org/content/361/6402/594.long
111
Covid19 Cell Atlas
Lung and Upper Airway (parenchyma)
scRNASEQ
https://cellxgene.cziscience.com/d/cellular_census_of_human_lungs_alveoli_and_parenchyma-15.cxg/
112
Covid19 Cell Atlas
Lung and Upper Airway (bronchi)
scRNASEQ
https://cellxgene.cziscience.com/d/cellular_census_of_human_lungs_bronchi-17.cxg/
113
Covid19 Cell Atlas
Lung and Upper Airway (nasal)
scRNASEQ
https://cellxgene.cziscience.com/d/cellular_census_of_human_lungs_nasal-16.cxg/
114
Covid19 Cell Atlas
Lung and Upper Airway (Deprez et al)
scRNASEQ
https://www.covid19cellatlas.org/deprez19/
115
Covid19 Cell Atlas
Lung and Upper Airway (Lukassen et al)
scRNASEQ
https://www.covid19cellatlas.org/lukassen20-lung/
116
Covid19 Cell Atlas
Lung and Upper Airway (bronchial epithelial cells)
scRNASEQ
https://www.covid19cellatlas.org/lukassen20-lung/
117
Covid19 Cell Atlas
Lung and Upper Airway (fetal lung)
scRNASEQ
https://www.covid19cellatlas.org/miller20/
118
Covid19 Cell Atlas
Lung and Upper Airway (parenchyma / PRJEB31843)
scRNASEQ
https://cellxgene.cziscience.com/d/ischaemic_sensitivity_of_human_tissue_by_single_cell_RNA_seq_lung-18.cxg/
119
Covid19 Cell Atlas
Skin
scRNASEQ
https://www.covid19cellatlas.org/cheng18/
120
Covid19 Cell Atlas/GSE117403
Prostate
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117403
121
Covid19 Cell Atlas
Colon, immune cells
scRNASEQ
https://cellxgene.cziscience.com/d/gut_cell_atlas-24.cxg/
122
Covid19 Cell Atlas
Heart
scRNASEQ
https://www.covid19cellatlas.org/litvinukova20/
123
Covid19 Cell Atlas/GSE115469
Liver
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115469
124
Covid19 Cell Atlas/E-MTAB-7407
Fetal Liver
scRNASEQ
https://cellxgene.cziscience.com/d/human_fetal_liver_single_cell_transcriptome-13.cxg/
125
Covid19 Cell Atlas
Gall Bladder
scRNASEQ
https://www.covid19cellatlas.org/miao20/
126
Covid19 Cell Atlas
Gingiva
scRNASEQ
https://www.covid19cellatlas.org/byrd20/
127
Covid19 Cell Atlas
Salivary Gland
scRNASEQ
https://www.covid19cellatlas.org/warner20/
128
Covid19 Cell Atlas
Gingiva, Salivary Gland
scRNASEQ
https://www.covid19cellatlas.org/byrdwarner21/
129
Covid19 Cell Atlas
Colon, epithelial
scRNASEQ
https://www.covid19cellatlas.org/smillie19/
130
Covid19 Cell Atlas / GSE135922
Retina
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE135922
131
Covid19 Cell Atlas
Retina (GSE137537, GSE137846)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE137847
132
Covid19 Cell Atlas
Retina (E-MTAB-7316)
scRNASEQ
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-7316/
133
Covid19 Cell Atlas
Ileum, Colon, Rectum (GSE125970)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125970
134
Covid19 Cell Atlas
Ileum (GSE134809)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134809
135
Covid19 Cell Atlas
Thymus
scRNASEQ
https://www.ncbi.nlm.nih.gov/pubmed/32079746
136
Covid19 Cell Atlas
Spleen (PRJEB31843)
scRNASEQ
https://www.tissuestabilitycellatlas.org/spleen
137
Covid19 Cell Atlas
Esophagus (PRJEB31843)
scRNASEQ
https://www.tissuestabilitycellatlas.org/oesophagus
138
Gut Cell Atlas
6-11 weeks fetal guts ( colon, duojejunum, ileum)
scRNASEQ
https://www.gutcellatlas.org/fetal
139
E-MTAB-8142
Skin
scRNASEQ
https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8142/
140
Syn21041850
Lung Atlas
scRNASEQ
https://www.synapse.org/#!Synapse:syn21041850/wiki/600865
141
PRJNA472816
Bone Marrow (Mesenchymal Stem Cells)
scRNASEQ
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA472816
142
GSE120446
Bone Marrow (GSE120221,GSE120444)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120446
143
GSE114374
Colon
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114374
144
GSE116222
Colon
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116222
145
GSE124494
Lymph Nodes
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124494
146
GSE112302
Stomach
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112302
147
GSE151192
Vagina
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151192
148
GSE155683
Eyes (Cornea/Conjunctiva)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155683
149
GSE165860
Tonsil
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165860
150
GSE161382
Lung (Superseries: GSE161383)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE161383
151
GSE144240
Skin (Subseries: GSE144236,GSE144239)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144236
152
GSE103239
Multi-tissues (Sub-series: GSE95630, GSE103154)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103239
153
Psychencode
Brain (prenatal, adult)
scRNASEQ
http://development.psychencode.org/#
154
GSE114725
Breast
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114725
155
GSE149683
Fetal multi-tissues (4 adrenal, 7 brain, 3 eye, 5 heart, 3 intestine, 8 kidney, 7 liver, 8 lung, 2 muscle, 1 pancreas, 5 placenta, 1 spleen, 2 stomach, 4 thymus)
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149683
156
GSE141862
Fetal CNS: Microglia
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE141862
157
Human Lung Atlas
Human Lung Atlas of healthy donors
scRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164898
158
Heat Global
Cardiac
scRNASEQ+snRNASEQ
https://www.heartcellatlas.org/global
159
Heat Global
Skeletal muscles
scRNASEQ+snRNASEQ
https://www.heartcellatlas.org/skm
160
10X
Human B cells from a Healthy Donor, 1k cells - multi (v2) - Human B cells
scRNASEQ+scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/6.0.0/sc5p_v2_hs_B_1k_multi_5gex_b_sc5p_v2_hs_B_1k_multi_5gex_b
161
10X
PBMCs of a healthy donor - 5' gene expression and cell surface protein
scRNASEQ+scImmune
https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_hs_pbmc2_5gex_protein
162
GSE173231
Ectocervix (scRNASEQ+scImmune)
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173231
163
GSE165193
PBMC (cord blood)
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165193
164
GSE166489
PBMC
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166489
165
GSE145370
Esophagus
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145370
166
GSE148837
Colon
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148837
167
GSE149356
PBMC (Cord Blood, Normal PBMC)
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149356
168
GSE125527
Multi-tissues (Rectums, Ileums, PBMCs)
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE125527
169
GSE144469
Colon
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE144469
170
GSE139555
Multi-tissues (Endometrium, Lung, Renal)
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE139555
171
GSE159929
Multi-tissues (Bladder, Blood, Common.bile.duct, Esophagus, Heart,Liver,Lymph.node,Marrow,Muscle,Rectum,Skin,Small.intestine,Spleen,Stomach, Trachea )
scRNASEQ+scImmune
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159929
172
10X
Human Cerebellum: Targeted, Neuroscience Panel
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.2.0/Targeted_Visium_Human_Cerebellum_Neuroscience
173
10X
Human Cerebellum: Whole Transcriptome Analysis
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.2.0/Parent_Visium_Human_Cerebellum
174
10X
Human Spinal Cord: Targeted, Neuroscience Panel. Stains: DAPI, Anti-SNAP25, Anti-GFAP, Anti-Myelin CNPase
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.2.0/Targeted_Visium_Human_SpinalCord_Neuroscience
175
10X
Human Spinal Cord: Whole Transcriptome Analysis. Stains: DAPI, Anti-SNAP25, Anti-GFAP, Anti-Myelin CNPase
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.2.0/Parent_Visium_Human_SpinalCord
176
10X
Adult Human Brain 1 (Cerebral Cortex)
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Human_Brain_Section_1
177
10X
Adult Human Brain 2 (Cerebral Cortex)
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Human_Brain_Section_2
178
10X
Human Heart
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Human_Heart
179
10X
Human Lymph Node
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Human_Lymph_Node
180
10X
Human Heart
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.0.0/V1_Human_Heart
181
10X
Human Lymph Node
scSpatial
https://support.10xgenomics.com/spatial-gene-expression/datasets/1.0.0/V1_Human_Lymph_Node
182
GSE158328
Colon, Small Intestine
scSpatial
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE158328
183
GSE165839
Heart (Subseries: GSE165837)
snATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165839
184
GSE151302
Kidney
snATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151302
185
GSE165037
Brain
snATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165037
186
GSE160472
Pancreas (3 pancreatic islets, 2 pancreas)
snATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE160472
187
GSE184462
A single-cell atlas of chromatin accessibility in the human genome (multi-tissues)
snATAC
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE184462
188
GSE165838
Heart (left, right atrium, ventricle)
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165838
189
GSE156707
Heart
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156703
190
GSE166355
Perivascular adipose
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166355
191
Allen Brain Map
Human M1 10X Motor Cortex
snRNASEQ
https://portal.brain-map.org/atlases-and-data/rnaseq/human-m1-10x
192
Allen Brain SMARTSEQ
Human Multiple Cortical Areas SMART-seq
snRNASEQ
https://portal.brain-map.org/atlases-and-data/rnaseq/human-multiple-cortical-areas-smart-seq
193
GSE118184
Kidney
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE118184
194
GSE151302
Kidney
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151302
195
GSE165037
Brain
snRNASEQ
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE165037
bottom of page